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The diversity of molecular interactions involving intrinsically disordered proteins: A molecular modeling perspective

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Ilinka Clerc | Amin Sagar | Alessandro Barducci | Nathalie Sibille | Pau Bernadó | Juan Cortés

https://doi.org/10.1016/j.csbj.2021.06.031 Actions

CCA-addition in the cold: Structural characterization of the psychrophilic CCA-adding enzyme from the permafrost bacterium Planococcus halocryophilus

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Raphaël de Wijn | Kévin Rollet | Felix G.M. Ernst | Karolin Wellner | Heike Betat | Mario Mörl | Claude Sauter

https://doi.org/10.1016/j.csbj.2021.10.018 Actions

MD-CTS: An integrated terminology reference of clinical and translational medicine

JOURNAL ARTICLE published 2016 in Computational and Structural Biotechnology Journal

Research funded by NIH National Center for Advancing Translational Sciences (NCATS) (UL1TR000427)

Authors: Will Ray | Joe Finamore | Majid Rastegar-Mojarad | Chris Kadolph | Zhan Ye | Jacquie Bohne | Yin Xu | Dan Burish | Joshua Sondelski | Melissa Easker | Brian Finnegan | Barbara Bartkowiak | Catherine Arnott Smith | Umberto Tachinardi | Eneida A. Mendonca | Bryan Weichelt | Simon M. Lin

https://doi.org/10.1016/j.csbj.2016.02.004 Actions

Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Tanja Turunen | Ana Hernández de Sande | Petri Pölönen | Merja Heinäniemi

https://doi.org/10.1016/j.csbj.2021.03.035 Actions

Featured interactome of homocysteine-inducible endoplasmic reticulum protein uncovers novel binding partners in response to ER stress

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by National Natural Science Foundation of China (32070148,32100738,32200753)

Authors: Rui Su | Jialing Yin | Xiaolan Ruan | Yanxi Chen | Pin Wan | Zhen Luo

https://doi.org/10.1016/j.csbj.2023.09.006 Actions

Unbiased Mitoproteome Analyses Confirm Non-canonical RNA, Expanded Codon Translations

JOURNAL ARTICLE published 2016 in Computational and Structural Biotechnology Journal

Research funded by “Investissements d'Avenir” French Government (ANR-11-IDEX-0001-02))

Authors: Hervé Seligmann

https://doi.org/10.1016/j.csbj.2016.09.004 Actions

MEETING REPORT: THE SEVENTH CONFERENCE OF THE HELLENIC SOCIETY FOR COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

JOURNAL ARTICLE published March 2013 in Computational and Structural Biotechnology Journal

Authors: Stavros J Hamodrakas | Ioannis Iliopoulos | Christos A Ouzounis | Pantelis G Bagos | Vasilis J Promponas

https://doi.org/10.5936/csbj.201303006 Actions

Discovery of the EL-0052 as a potential anesthetic drug

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Jun-hao Jiang | Xiang-qing Xu | Wen-gao Jiang | Tao Wang | Xin Liu | Ling-guo Zeng | Jian Liao | Jing-ya Xiu | Yi Shen | Ping Deng | Qin-geng Li

https://doi.org/10.1016/j.csbj.2021.01.002 Actions

Discovery of a novel (R)-selective bacterial hydroxynitrile lyase from Acidobacterium capsulatum

JOURNAL ARTICLE published June 2014 in Computational and Structural Biotechnology Journal

Research funded by European Union's Seventh Framework Programme for Research, Technological Development and Demonstration (289646)

Authors: Romana Wiedner | Mandana Gruber-Khadjawi | Helmut Schwab | Kerstin Steiner

https://doi.org/10.1016/j.csbj.2014.07.002 Actions

ccTCM: A quantitative component and compound platform for promoting the research of traditional Chinese medicine

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Dongqing Yang | Zhu Zhu | Qi Yao | Cuihua Chen | Feiyan Chen | Ling Gu | Yucui Jiang | Lin Chen | Jingyuan Zhang | Juan Wu | Xingsu Gao | Junqin Wang | Guochun Li | Yunan Zhao

https://doi.org/10.1016/j.csbj.2023.11.030 Actions

Assessing the effect of selective serotonin reuptake inhibitors in the prevention of post-acute sequelae of COVID-19

JOURNAL ARTICLE published December 2024 in Computational and Structural Biotechnology Journal

Authors: Hythem Sidky | Kristen A. Hansen | Andrew T. Girvin | Nathan Hotaling | Sam G. Michael | Ken Gersing | David K. Sahner

https://doi.org/10.1016/j.csbj.2023.12.045 Actions

JLOH: Inferring loss of heterozygosity blocks from sequencing data

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Matteo Schiavinato | Valentina del Olmo | Victor Njenga Muya | Toni Gabaldón

https://doi.org/10.1016/j.csbj.2023.11.003 Actions

GENI: A web server to identify gene set enrichments in tumor samples

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Israel Science Foundation (299/21)

Authors: Arata Hayashi | Shmuel Ruppo | Elisheva E. Heilbrun | Chiara Mazzoni | Sheera Adar | Moran Yassour | Areej Abu Rmaileh | Yoav D. Shaul

https://doi.org/10.1016/j.csbj.2023.10.053 Actions

Dominant constraints on the evolution of rhythmic gene expression

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Science and Technology Commission of Shanghai Municipality (2017SHZDZX01) | National Natural Science Foundation of China (31600960,31871333,81827901)

Authors: Yang Cheng | Yuhao Chi | Linying Sun | Guang-Zhong Wang

https://doi.org/10.1016/j.csbj.2023.08.035 Actions

DBTRG: De Bruijn Trim rotation graph encoding for reliable DNA storage

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Authors: Yunzhu Zhao | Ben Cao | Penghao Wang | Kun Wang | Bin Wang

https://doi.org/10.1016/j.csbj.2023.09.004 Actions

Neuroprotection Mediated by P2Y 13 Nucleotide Receptors in Neurons

JOURNAL ARTICLE published 2015 in Computational and Structural Biotechnology Journal

Research funded by Spanish Ministry of Economy and Competitivity (BFU2011-24743) | Spanish Initiative on Ion Channels (CSD2008-00005)

Authors: Raquel Pérez-Sen | Mª José Queipo | Verónica Morente | Felipe Ortega | Esmerilda G. Delicado | Mª Teresa Miras-Portugal

https://doi.org/10.1016/j.csbj.2015.02.002 Actions

Computational tools for exploring peptide-membrane interactions in gram-positive bacteria

JOURNAL ARTICLE published 2023 in Computational and Structural Biotechnology Journal

Research funded by Norges Forskningsråd (223255/F50,263168)

Authors: Shreya Kumar | Rex Devasahayam Arokia Balaya | Saptami Kanekar | Rajesh Raju | Thottethodi Subrahmanya Keshava Prasad | Richard K. Kandasamy

https://doi.org/10.1016/j.csbj.2023.02.051 Actions

Multiobjective heuristic algorithm for de novo protein design in a quantified continuous sequence space

JOURNAL ARTICLE published 2021 in Computational and Structural Biotechnology Journal

Authors: Rui-Xiang Li | Ning-Ning Zhang | Bin Wu | Bo OuYang | Hong-Bin Shen

https://doi.org/10.1016/j.csbj.2021.04.046 Actions

Computational Methods for Modification of Metabolic Networks

JOURNAL ARTICLE published 2015 in Computational and Structural Biotechnology Journal

Research funded by JSPS (25730005,25250028) | JSPS (26240034)

Authors: Takeyuki Tamura | Wei Lu | Tatsuya Akutsu

https://doi.org/10.1016/j.csbj.2015.05.004 Actions

The role of histone tails in nucleosome stability: An electrostatic perspective

JOURNAL ARTICLE published 2020 in Computational and Structural Biotechnology Journal

Research funded by Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (200020-182184)

Authors: Artemi Bendandi | Alessandro S. Patelli | Alberto Diaspro | Walter Rocchia

https://doi.org/10.1016/j.csbj.2020.09.034 Actions
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